[BioC] Problem installing CummeRbund 2.0.0 (BiocGenerics)

[Dan Tenenbaum]

Hi Eugene,

On Mon, Oct 8, 2012 at 2:01 PM, Fluder, Eugene <eugene.fluder at mssm.edu> wrote:
> Hi,
>
> CummeRbund 2.0.0 will not build on my system because it claims that the BiocGenerics version is 0.2.0 vice 0.4.0.
> I installed what I think is the latest BiocGenerics which is externally labeled 0.4.0 .

I'm not sure what you mean by "externally labeled".


> When I check the version with installed.packages() it reports back as 0.2.0.
>
> Did I miss something?
>

Sounds like you wanted to upgrade to Bioconductor 2.11.
These commands should do that for you:

source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")

After upgrading, you should have BiocGenerics 0.4.0.

Dan


> Gene
> -- Eugene M Fluder, Jr, PhD
> Computational Scientist
> Scientific Computing
>
> The Mt. Sinai School of Medicine
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> T: 212 659 8608
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