[BioC] biomaRt error in scan file
Matthew McCormack
mccormack at molbio.mgh.harvard.edu
Wed Oct 3 01:05:38 CEST 2012
When I run the following in biomaRt:
getBM(attributes=c('affy_ath1_121501', 'tair_locus', 'chromosome_name',
'start_position', 'end_position', 'strand', 'transcript_count',
'go_accession'), filters = 'affy_ath1_121501', values = affyids, mart =
ensemartplants)
I get the following error:
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,
na.strings, :
line 156 did not have 8 elements
I seems that the file coming back has a value that does not have all
8 attributes, but I don't know how I could fix that.
Matthew
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