[BioC] ggplots2 - heatmap2 colour labels
Paolo Kunderfranco
paolo.kunderfranco at gmail.com
Tue Oct 2 14:56:39 CEST 2012
Dear All,
I would like to add colours to my heatmap, for instance I have a set
of genes, some are up-regulated and some are down-regulated
example
this is my data.matrix
>x
Pfdn5 11.73 1.000
Aqp1 9.25 1.000
Lims2 11.15 1.000
Chrac1 1.00 13.990
Sdhb 1.00 7.460
Phpt1 8.28 1.000
Dhrs7c 10.93 1.000
Mrpl30 1.00 7.690
Mrps35 11.15 1.000
Mlf1 18.50 1.000
Atp5h 9.29 1.000
heatmap.2(x, Colv=F, Rowv=F,cexCol=0.5, main="test",
cexRow=0.3,scale="row", col=greenred(75), key=F, trace="none")
I would like to plot the first 3 labels in red and the rest in blue,
is it possible with heatmap.2 function?
Thanks,
Paolo
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