[BioC] Error in makeTranscriptDbFromBiomart
Fabrice Tourre
fabrice.ciup at gmail.com
Mon Oct 1 19:19:56 CEST 2012
hg19Ensembl <- makeTranscriptDbFromBiomart(biomart = "ensembl",
dataset = "hsapiens_gene_ensembl")
Download and preprocess the 'transcripts' data frame ... Error in
scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
line 197870 did not have 5 elements
sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] GenomicFeatures_1.8.3 AnnotationDbi_1.18.4 Biobase_2.16.0
[4] GenomicRanges_1.8.13 IRanges_1.14.4 BiocGenerics_0.2.0
loaded via a namespace (and not attached):
[1] biomaRt_2.12.0 Biostrings_2.24.1 bitops_1.0-4.1 BSgenome_1.24.0
[5] DBI_0.2-5 RCurl_1.95-0 Rsamtools_1.8.6 RSQLite_0.11.2
[9] rtracklayer_1.16.3 stats4_2.15.1 tools_2.15.1 XML_3.95-0
[13] zlibbioc_1.2.0
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