[BioC] IRanges: how to emulate findOverlaps(multiple=TRUE)?

[Michael.Dondrup at uni.no]

Hi,
I have some R-scripts that rely on the argument multiple=TRUE
in findOverlaps(). However, this option has been removed in the latest
release it seems, as it was said to be deprecated before. But now
our scripts don't work any more, and removing the parameter
simply yields a different output format and is not an option.

Is there a quick way to  bring the behavior of it back, with respect to
output format and overlap matching?

Thank you very much for your help
Michael