[BioC] load a TranscriptDb object in another R session?
Sang Chul Choi
schoi at cornell.edu
Fri Apr 6 20:34:29 CEST 2012
Hi,
I made a TranscriptDb object, which worked fine when I use it in the same R session. I want to reuse it by saving the object and loading it in another R session. I got an error like following:
> txdb <- makeTranscriptDb (transcripts, splicings, chrominfo=chrominfo)
> save(txdb, file="a.rda")
... quit R and rerun R
> load("a.rda")
> feature.cds <- cds(txdb, columns="exon_name")
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (expired SQLiteConnection)
What do I have to reuse a TranscriptDb object in another R session?
Thank you,
SangChul
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