[BioC] Problems installing Genominator and GenomeGraphs

Jose Lopez [guest] guest at bioconductor.org
Tue Apr 3 21:21:04 CEST 2012


I already used

source("http://bioconductor.org/biocLite.R")
biocLite("Genominator")
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'RCurl' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'biomaRt' had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'GenomeGraphs' had non-zero exit status
4: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'Genominator' had non-zero exit status

I already tried with others packages and had no problem. 

Apparently is the biomaRt package, when tried to install it directly, I had the same problem. What do I need to do?

Thank you.

 -- output of sessionInfo(): 

R version 2.12.1 (2010-12-16)
Platform: i686-pc-linux-gnu (32-bit)

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_2.12.1

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