[BioC] Problems installing Genominator and GenomeGraphs
Jose Lopez [guest]
guest at bioconductor.org
Tue Apr 3 21:21:04 CEST 2012
I already used
source("http://bioconductor.org/biocLite.R")
biocLite("Genominator")
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'RCurl' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'biomaRt' had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'GenomeGraphs' had non-zero exit status
4: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package 'Genominator' had non-zero exit status
I already tried with others packages and had no problem.
Apparently is the biomaRt package, when tried to install it directly, I had the same problem. What do I need to do?
Thank you.
-- output of sessionInfo():
R version 2.12.1 (2010-12-16)
Platform: i686-pc-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.12.1
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