[BioC] CGHweb and cghFLasso

[Chris Fenton]

Trying to automate some of the uni's CGH experiments. 
Have pretty much installed CGHweb. 
Stuck on cghFLasso. 
Anyone seen this error before. 

>>>>>>>>>>>>>>>error<<<<<<<<<<<<<<<<<<<<<<<
Installing package(s) into
'/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13'
(as 'lib' is unspecified)
trying URL 'http://cran.fhcrc.org/src/contrib/cghFLasso_0.2-1.tar.gz'
Content type 'application/x-gzip' length 129919 bytes (126 Kb)
opened URL
==================================================
downloaded 126 Kb

* installing *source* package 'cghFLasso' ...
** libs
gcc -std=gnu99 -I/usr/local/lib64/R/include  -I/usr/local/include
-fpic  -g -O2 -c L2L1VitExact.c -o L2L1VitExact.o
g77  -fpic -g -O2 -c  smooth.f90 -o smooth.o
g77: smooth.f90: linker input file unused because linking not done
g77 -shared -L/usr/local/lib64 -o cghFLasso.so L2L1VitExact.o smooth.o
-L/usr/local/lib64/R/lib -lR
g77: smooth.o: No such file or directory
make: *** [cghFLasso.so] Error 1
ERROR: compilation failed for package 'cghFLasso'
* removing
'/home/chrisf/R/x86_64-unknown-linux-gnu-library/2.13/cghFLasso'

The downloaded packages are in
	'/tmp/RtmpoTkkOD/downloaded_packages'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'cghFLasso' had non-zero exit status

>>>>>>>>>>>>>>>>version<<<<<<<<<<<<<<<<<<<
Using R version 2.13.0, biocinstall version 2.8.4.

platform       x86_64-unknown-linux-gnu     
arch           x86_64                       
os             linux-gnu                    
system         x86_64, linux-gnu            
status                                      
major          2                            
minor          13.0                         
year           2011                         
month          04                           
day            13                           
svn rev        55427                        
language       R                            
version.string R version 2.13.0 (2011-04-13)