[BioC] DESEQ problem

[Steve Lianoglou]

Hi Dawei,

I'm not sure what the problem is myself, but to help facilitate you
getting an answer from those who might now what's happening, I suggest
you provide the output of sessionInfo() when DESeq is loaded, so that
we can see what versions of DESeq (and R) you are running.

-steve


On Mon, Sep 19, 2011 at 9:51 AM, Dawei Li <dawei_lili at yahoo.com> wrote:
> Dear simon:
>
> I used your program to process the count data. I got the following message when I generate the plott:
>> smoothScatter( log10(diagForIC$baseMean), log10(diagForIC$baseVar) )
> KernSmooth 2.23 loaded
> Copyright M. P. Wand 1997-2009
> Error in if (!missing(bandwidth) && min(bandwidth) <= 0) stop("'bandwidth' must be strictly positive") :
>   missing value where TRUE/FALSE needed
> Calls: smoothScatter -> <Anonymous> -> <Anonymous>
> In addition: Warning messages:
> 1: In min(x) : no non-missing arguments to min; returning Inf
> 2: In max(x) : no non-missing arguments to max; returning -Inf
> 3: In min(x) : no non-missing arguments to min; returning Inf
> 4: In max(x) : no non-missing arguments to max; returning -Inf
> Execution halted
>
>
> Please give me some advice.
>
> dawei li
>
>        [[alternative HTML version deleted]]
>
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>



-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact