[BioC] agi4x44preprocess

[Tobias Straub]

what about
 >targets = read.targets(infile="infile.txt")
 >read.AgilentFE(targets, makePLOT)

best
T.

On Oct 27, 2009, at 4:43 PM, Neel Aluru wrote:

> Hello,
>
> I am just beginning to work with Bioconductor and started having  
> issues, which I think are minor but cannot figure out myself. I  
> started using Agi4x44preprocess and the first step went fine. That is
>
> >targets = read.targets(infile="infile.txt")
> This loads my list of files and treatments as a data.frame.
> My problem is with the next step.
> >read.AgilentFE(infile, makePLOT)
>
> I get an error message, "Error in is(targets, "data.frame") : object  
> 'infile' not found". I have the infile and all the agilentFE text  
> files in my working directory. Not sure where I am doing it wrong.
>
> Any help is appreciated.
>
> Sincerely, Neel
>
> Neel Aluru
> Postdoctoral Scholar
> Biology Department
> Woods Hole Oceanographic Institution
> Woods Hole, MA 02543
> USA
>
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Dr. Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, München D