[BioC] Querying dbSNP
Dr. Sanjay Bhatikar
sanjay.bhatikar at biobase-international.com
Wed Oct 21 09:07:17 CEST 2009
HI Sharon,
why not consumer their web-service in a Perl script with SOAP? You can
pipe data to R from Perl to perform any analytics that you may need.
Cheers!
- SanjaY
Marc Carlson wrote:
Hi Sharon,
It's not clear to me from your email what you intend to do, but I know
that some dbSNP data is available as a UCSC track and should therefore
be obtainable by using the rtracklayer package.
Marc
Sharon wrote:
Dear All,
Is there any tool in Bioconductor to query dbSNP? I know that (correct me,
if I am wrong) biomaRt is primarily for Ensemble.
Thanks in advance.
Kind regards,
Sharon.
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