[BioC] Annotation Rat Gene 1.0ST
Benilton Carvalho
bcarvalh at jhsph.edu
Mon Oct 12 17:09:44 CEST 2009
Dear German,
I believe you need the ragene10stprobeset.db package.
b
On Oct 12, 2009, at 4:13 AM, Germán González wrote:
> I used "pd.ragene.1.0.st.v1" to perform a microarray analysis of
> Affymetrix Rat Gene 1.0ST. Now I need annotation data of the array,
> then I try this:
>
> probe_ids <- rat$ID
> gene_symbols <- aafSymbol(probe_ids, "pd.ragene.1.0.st.v1.db")
> go_categories <- aafGO(probe_ids, "pd.ragene.1.0.st.v1.db")
> genbank_accessions <- aafGenBank(probe_ids, "pd.ragene.1.0.st.v1.db")
>
> but this does not work because the file .db does not exist. How can
> I get the annotation data?
>
> Thanks, Germán
>
> [[alternative HTML version deleted]]
>
> <ATT00001.txt>
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