[BioC] Hypergraph representation of reactions

Robert Gentleman rgentlem at fhcrc.org
Mon Oct 5 20:01:06 CEST 2009


Hi Anand,

Anand Gavai wrote:
> Dear Community,
> 
> We are working on reaction networks representing metabolites and reactions,
> to display such a network we use bipartite graphs representing metabolites
> and reactions. However to visualize and understand them is a bit difficult
> from a biologist perspective.
> 
> So was wondering if there is some effort going in this regard on the
> implementation of a hypergraph as shown in "C" of the attached file. There
> was an initiative few years back on the "hypergraph" package, but I guess
> the development has stopped!!.

   slowed down.

Did you try to render those graphs? I did not see anything that could 
not be done with Rgraphviz, pretty much as it is now.

   best wishes
      Robert

> 
> Any information in this regard will be of great help.
> 
>  
> 
> Thanks and Regards,
> 
>  
> 
> Anand
> 
>  
> 
> 
> 
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