[BioC] problem with downloading dataset using GEOquery
Kishor Tappita
kishor.tappita at gmail.com
Mon Oct 5 15:03:34 CEST 2009
Dear List,
When I am trying to download a dataset from GEO. I get the below
error at the end of my
command session.
> dataset2 <- getGEO("GSE12885")
File stored at: C:\DOCUME~1\WELCOM~1\LOCALS~1\Temp\RtmpYy3CGa/GPL5082.soft
Error in txt[i] <- readLines(con, 1) : replacement has length zero
> sessionInfo()
R version 2.9.2 (2009-08-24)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] GEOquery_2.8.0 RCurl_0.98-1 bitops_1.0-4.1 Biobase_2.4.1
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.6.1 DBI_0.2-4 graph_1.22.2
[4] grid_2.9.2 lattice_0.17-25 RSQLite_0.7-2
[7] SparseM_0.80 tools_2.9.2 topGO_1.12.0
Thanks,
Kishor
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