[Bioc-sig-seq] Package affy and its depencies

[Ivan Gregoretti]

There seems to be a dependency error that comes up when running an
analysis with affy. It only takes three commands.

###################################################################
library(affy)

Data <- ReadAffy(file="/home/johndoe/GSM492799.CEL.gz")

eset <- rma(Data)

Warning in install.packages(cdfname, lib = lib, repos =
Biobase:::biocReposList(),  :
  'lib = "/usr/local/lib64/R/library"' is not writable
Would you like to create a personal library
~/R/x86_64-unknown-linux-gnu-library/2.14
to install packages into?  (y/n)
###################################################################

Is this error reproducible by others?

Thank you

Ivan


sessionInfo()
R version 2.14.0 Under development (unstable) (2011-04-14 r55450)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] affy_1.31.1    Biobase_2.13.1

loaded via a namespace (and not attached):
[1] affyio_1.21.0         preprocessCore_1.15.0 tools_2.14.0


Ivan Gregoretti, PhD
National Institute of Diabetes and Digestive and Kidney Diseases
National Institutes of Health
5 Memorial Dr, Building 5, Room 205.
Bethesda, MD 20892. USA.
Phone: 1-301-496-1016 and 1-301-496-1592
Fax: 1-301-496-9878