[Bioc-sig-seq] Consolidating RangedData

[Ivan Gregoretti]

Hello Steve,

I tried your suggestion but I get:

stack(RangedDataList(LargeListOfSmallRangedData), indName='space')
Error in `[[<-`(`*tmp*`, indName, value = c(1L, 1L, 1L, 1L, 1L, 2L, 2L,  :
  cannot replace "space" information

I have the latest R dev and BioC dev packages. So, I will settle for
do.call. Thank you for the suggestion.

Ivan





On Thu, Jan 6, 2011 at 11:47 AM, Steve Lianoglou
<mailinglist.honeypot at gmail.com> wrote:
> Hi,
>
> On Thu, Jan 6, 2011 at 11:21 AM, Ivan Gregoretti <ivangreg at gmail.com> wrote:
>> I assumed that RangedDataList was the same as "list of RangedData".
>>
>> at the moment I can't coerce one into the other:
>>
>> as(LargeListOfSmallRangedData,'RangedDataList')
>> Error in as(LargeListOfSmallRangedData, "RangedDataList") :
>>  no method or default for coercing "list" to "RangedDataList"
>
> Try:
>
> R> rdl <- RangedDataList(LargeListOfSmallRangedData)
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>