[Bioc-sig-seq] using subseq() on a DNAStringSet

[Steve Lianoglou]

Woops, small type in my example:

## assigning `<-` into a DNAString in *this* context will fail
R> subseq(x[1], 2, 3) <- NULL
Error in `[[<-`(`*tmp*`, 1, value = <S4 object of class "DNAString">) :
 no method for assigning subsets of this S4 class

Should have been:
R> subseq(x[[1]], 2, 3) <- NULL

Not sure how that slipped through like that, sorry.

Btw:

sessionInfo()
R version 2.11.0 Patched (2010-05-05 r51909)
x86_64-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
[1] Biostrings_2.16.0 IRanges_1.7.1

loaded via a namespace (and not attached):
[1] Biobase_2.8.0

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact