[Bioc-sig-seq] MapProfileShort data error?

[Gottardo Raphaël]

MapProfileShort is just a toy like example, it's actually a small part of a real mappability profile.
We had to make it smaller for the package, so what you are reporting is probably normal.
We are in the process of generating mappability profiles for a bunch of genomes, everything will be posted on our wiki (wiki.rglab.org<http://wiki.rglab.org>).



On 2010-05-20, at 10:32 PM, Tim Lu wrote:

Dear Raphael Gottardo,

   I happened to come across your recent manuscript “PICS – Probabilistic Inference for ChIPseq” and downloaded the R package and data accompanying the paper. Looking at the data in the MapProfileShort file, I noticed that the regions for chr13, chr14, chr15, chr21 and chr22 were identical. I am not sure if this is deliberate or not, I suspect that there may be an error in this file. I thought I would alert you to this potential problem before your paper comes out in Biometrics (congratulations by the way).

   Best wishes, Tim Lu


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