[Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?

[Martin Morgan]

On 03/01/2010 12:40 AM, Johannes Rainer wrote:
> dear all,
> 
> I'm just wondering if anybody has already implemented a ChIP-seq peak
> detection algorithm (like MACS, PeakSeq...) or plans to do so.

See http://bioconductor.org/packages/release/Software.html and search
for chipseq, e.g., chipseq, ChIPseqR implement peak detection algorithms
(though not MACS or PeakSeq; approximations of these algorithms are not
difficult to implement using IRanges / Biostrings / ShortRead
infrastructure).

Martin

> 
> bests, jo
> 


-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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