[Bioc-sig-seq] Problem loading PICS in Windows
Gottardo Raphaël
Raphael.Gottardo at ircm.qc.ca
Fri Jun 11 14:13:32 CEST 2010
Thanks for reporting Jose,
We will look into this issue and will fix the files available on our wiki.
------------------------------------------------------------------
Raphael Gottardo, PhD
Research Unit Director in Computational Biology
Clinical Research Institute of Montreal (IRCM)
110, avenue des Pins Ouest
Montréal (Québec) H2W 1R7
url: http://www.rglab.org<http://www.rglab.org/>
phone: 514-987-5747
fax: 514-987-5546
email: raphael.gottardo at ircm.qc.ca<mailto:raphael.gottardo at ircm.qc.ca>
On Jun 11, 2010, at 8:09 AM, Muino, Jose wrote:
Hi Raphael,
Indeed, the problem was that the GSL library was not installed on my computer.
I was following the instruction from your wiki, but it didn't work for me. When I install the Windows binary (32 bits), the files on the bin folder are:
gsl-histogram.exe
gsl-randist.exe
libgsl-0.dll
libgslcblas-0.dll
But there is no libgsl.dll file. And PICS gives an error since doesn't find this file.
But using http://gnuwin32.sourceforge.net/packages/gsl.htm, the files on the bin folder are:
gsl-histogram.exe
gsl-randist.exe
libgsl.dll
libgslcblas.dll
And then PICS seems to work without any problem.
Kind regards,
Jose
Dr. Jose M Muino
Plant Research International B.V.
Droevendaalsesteeg 1
P.O. Box 16, 6700 AA Wageningen, The Netherlands
Phone: +0317-481122.
E-mail: jose.muino at wur.nl<mailto:jose.muino at wur.nl>
http://www.pri.wur.nl
-----Original Message-----
From: Gottardo Raphaël [mailto:Raphael.Gottardo at ircm.qc.ca]
Sent: woensdag 9 juni 2010 16:37
To: Muino, Jose
Cc: bioc-sig-sequencing at r-project.org<mailto:bioc-sig-sequencing at r-project.org>
Subject: Re: [Bioc-sig-seq] Problem loading PICS in Windows
Did you follow the documentation and installed GSL? It's
explained in the vignette.
You might also want to look at:
http://wiki.rglab.org/index.php?title=Public:The_GSL_library_and_R
We provide binary versions that you can download from the page above.
I will add a sentence in the description file, it's there for
our other packages but not PICS.
Please let me know if you are still having problems.
Raphael
On Jun 9, 2010, at 10:30 AM, Muino, Jose wrote:
Hi,
I have a little problem loading PICS.
After installing the package without any error or warning
message, I tried to load the package with the next error:
library(PICS)
Error in inDL(x, as.logical(local), as.logical(now), ...) :
unable to load shared library
'C:/PROGRA~1/R/R-211~1.1/library/PICS/libs/PICS.dll':
LoadLibrary failure: The specified module could not be found.
Error: package/namespace load failed for 'PICS'
I also get a window error saying:
"RGui: Rgui.exe - Unable to locate Component This application
has failed to start because libgsl.dll was not found"
Do you know how to solve the problem?
Thanks,
Jose
sessionInfo()
R version 2.11.1 (2010-05-31)
i386-pc-mingw32
locale:
[1] LC_COLLATE=Dutch_Netherlands.1252
LC_CTYPE=Dutch_Netherlands.1252 [3]
LC_MONETARY=Dutch_Netherlands.1252 LC_NUMERIC=C [5]
LC_TIME=Dutch_Netherlands.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] chipseq_0.4.0 ShortRead_1.6.2 Rsamtools_1.0.2
[4] lattice_0.18-8 BSgenome_1.16.2 Biostrings_2.16.5
[7] GenomicRanges_1.0.3 IRanges_1.6.6
loaded via a namespace (and not attached):
[1] Biobase_2.8.0 grid_2.11.1 hwriter_1.2
Dr. Jose M Muino
Plant Research International B.V.
Droevendaalsesteeg 1
P.O. Box 16, 6700 AA Wageningen, The Netherlands
Phone: +0317-481122.
E-mail: jose.muino at wur.nl<mailto:jose.muino at wur.nl>
http://www.pri.wur.nl
_______________________________________________
Bioc-sig-sequencing mailing list
Bioc-sig-sequencing at r-project.org<mailto:Bioc-sig-sequencing at r-project.org>
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
------------------------------------------------------------------
Raphael Gottardo, PhD
Research Unit Director in Computational Biology Clinical
Research Institute of Montreal (IRCM) 110, avenue des Pins
Ouest Montréal (Québec) H2W 1R7
url: http://www.rglab.org<http://www.rglab.org/>
phone: 514-987-5747
fax: 514-987-5546
email: raphael.gottardo at ircm.qc.ca<mailto:raphael.gottardo at ircm.qc.ca>
_______________________________________________
Bioc-sig-sequencing mailing list
Bioc-sig-sequencing at r-project.org<mailto:Bioc-sig-sequencing at r-project.org>
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
More information about the Bioc-sig-sequencing
mailing list