[Bioc-sig-seq] readAligned and BAM format
Martin Morgan
mtmorgan at fhcrc.org
Mon Nov 2 22:15:22 CET 2009
Laurent Gautier wrote:
>
> A quick way to have it would be C-level wrappers to the SAMtools library
> ( http://samtools.sourceforge.net/ ).
>
This is what Rsamtools does. Martin
>
> L.
>
>
> Joern Toedling wrote:
>> Hi everyone,
>>
>> has anybody by chance already written a parser for importing
>> alignments in
>> BAM/SAM format into objects of class AlignedRead? This format seems to be
>> gaining more and more support, yet it is still absent from the options in
>> function readAligned. If one of you already has written such a parsing
>> function and would not mind sharing it, please let me know.
>>
>> Best regards,
>> Joern
>>
>> ---
>> Joern Toedling
>> Institut Curie -- U900
>> 26 rue d'Ulm, 75005 Paris, FRANCE
>> Tel. +33 (0)156246926
>>
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>
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--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
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