[Bioc-sig-seq] readAligned and BAM format

[Martin Morgan]

Laurent Gautier wrote:
> 
> A quick way to have it would be C-level wrappers to the SAMtools library
> ( http://samtools.sourceforge.net/ ).
> 

This is what Rsamtools does. Martin

> 
> L.
> 
> 
> Joern Toedling wrote:
>> Hi everyone,
>>
>> has anybody by chance already written a parser for importing
>> alignments in
>> BAM/SAM format into objects of class AlignedRead? This format seems to be
>> gaining more and more support, yet it is still absent from the options in
>> function readAligned. If one of you already has written such a parsing
>> function and would not mind sharing it, please let me know.
>>
>> Best regards,
>> Joern
>>
>> ---
>> Joern Toedling
>> Institut Curie -- U900
>> 26 rue d'Ulm, 75005 Paris, FRANCE
>> Tel. +33 (0)156246926
>>
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> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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