[Bioc-sig-seq] removing variable length 3' adaptor sequence

[Martin Morgan]

Lana Schaffer wrote:
> Hi,
> We have Illumina sequencing data for small RNA with
> variable length adapter sequence on the 3' end of the reads.
> How do you recommend removing the variable length
> adaptor sequences from the reads?

Biostrings::trimLRPatterns would be a good place to start.

Martin

> 
> Lana Schaffer
> Biostatistics/Informatics
> The Scripps Research Institute
> DNA Array Core Facility
> La Jolla, CA 92037
> (858) 784-2263
> (858) 784-2994
> schaffer at scripps.edu 
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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