[Bioc-sig-seq] Genominator

[Patrick Aboyoun]

Michael,
Bioconductor packages are coupled with a particular version of R. 
Genominator was introduced into Bioconductor in BioC 2.5 to be used with 
R 2.10. To use the Genominator package, update your version of R to 
2.10.1 and use the biocLite call you specified below.


Cheers,
Patrick


Michael Muratet wrote:
> Greetings
>
> I am trying to install Genominator (and GenomeGraphs). I tried the usual:
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("Genominator")
> and it returned:
> Running biocinstall version 2.3.14 with R version 2.8.0 Your version 
> of R requires version 2.3 of Bioconductor.
> Warning message: package ‘Genominator’ is not available
> So I tried downloading the tarball from the website and R CMD INSTALL 
> Genominator_1.0.2.tar.gz
> and got:
> {loading and cranking output} then
> ERROR: Environment (text enclosed in {}) found in \title{...}.
> The title must be plain text! ERROR: building help failed for package 
> 'Genominator' ** Removing 
> '/Library/Frameworks/R.framework/Resources/library/Genominator'
> I think maybe there's an issue with the package, but I'm willing to 
> accept I fouled up somewhere. Anybody have any suggestions?
> sysinfo:
> sessionInfo() R version 2.8.0 (2008-10-20) i386-apple-darwin8.11.1 
> locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached 
> base packages: [1] stats graphics grDevices utils datasets methods 
> base loaded via a namespace (and not attached): [1] tools_2.8.0
> Thanks
> Mike
>
> Michael Muratet, Ph.D.
> Senior Scientist
> HudsonAlpha Institute for Biotechnology
> mmuratet at hudsonalpha.org
> (256) 327-0473 (p)
> (256) 327-0966 (f)
>
> Room 4005
> 601 Genome Way
> Huntsville, Alabama 35806
>
> _______________________________________________
> Bioc-sig-sequencing mailing list
> Bioc-sig-sequencing at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing