[Bioc-sig-seq] Probs installing dev version of Rsamtools

[Seth Falcon]

Hi,


On 12/8/09 3:29 PM, Pratap, Abhishek wrote:
> 1.       R devel install

It might help to describe what you did to install R devel.  It doesn't 
seem that you are using R-devel based on your sessionInfo which says:

 > sessionInfo()
 >
 > R version 2.10.1 RC (2009-12-06 r50688)
 >
 > x86_64-unknown-linux-gnu

You should get something more along the lines of:

     R version 2.11.0 Under development (unstable) (--)


> ..CMD:- Rdev CMD INSTALL --clean Rsamtools/

You will also want to be sure dependencies are already installed when 
installing from source in this fashion.  Looking at the DESCIPTION file 
in Rsamtools/ you might try:

   Rdev
   source("http://bioconductor.org/biocLite.R")
   biocLite(c("IRanges", "Biostrings", "BSgenome"))

Then repeat what you tried for installing Rsamtools

+ seth

-- 
Seth Falcon
Program in Computational Biology | Fred Hutchinson Cancer Research Center