[Bioc-sig-seq] About trimming adaptor of Solexa short reads

[James W. MacDonald]

There is some older information from BioC2008 here (starting on page 12):

http://www.bioconductor.org/workshops/2008/BioC2008/labs/PairwiseSequenceAlignments/Alignments.pdf

Or you could search the Bioc-sig-seq listserv for newer information:

http://www.google.com/search?hl=en&as_q=adapter&as_epq=&as_oq=&as_eq=&num=10&lr=&as_filetype=&ft=i&as_sitesearch=https%3A%2F%2Fstat.ethz.ch%2Fpipermail%2Fbioc-sig-sequencing%2F&as_qdr=all&as_rights=&as_occt=any&cr=&as_nlo=&as_nhi=&safe=images

Best,

Jim


Xiang Xu wrote:
> Hello all,
> 
> Is there someone can show me some software or tools for trimming the
> adaptors of Solexa short reads? Do you have any protocol for analysis
> sequencing data of gene expression and small RNA?
> 
> Thanks in advance.
> 
> Regards,
> 
> Xiang Xu
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826