[Bioc-sig-seq] [BioC] Alignments timings

[James W. MacDonald]

Hi Herve,

Hervé Pagès wrote:
<snip>
> bowtie, MAQ and Eland return at most 1 match
> per read. 

This isn't true. The default is one, but you can have as many as you 
want for any of these tools. Of course there is a penalty for more matches.

Best,

Jim


-- 
James W. MacDonald, M.S.
Biostatistician
Hildebrandt Lab
8220D MSRB III
1150 W. Medical Center Drive
Ann Arbor MI 48109-0646
734-936-8662